I am using PhageRBP detection which uses bioembeddings tool. In that, I am trying to create embeddings for a genome of e.coli phage of size 108485kb but I get this error immediately. I am working in Google Colab since I am a complete beginner and only comfortable working in that
The expanded size of the tensor (108485) must match the existing size (40000) at non-singleton dimension 1. Target sizes: [1, 108485]. Tensor sizes: [1, 40000]. This most likely means that you don’t have enough GPU RAM to embed a protein this long.
As I tried to navigate, I realized it originates from the transformer tool that they are trying to use. I tried seeing if chatgpt can be of any use but it just says the expand function cannot expand beyond 40000. I am willing to pay for Colab Pro or Pro+ as well if that would solve this issue. I have 100s of genomes of similar size to run as well. I do not know how to solve this.
Can someone help me with how to resolve this, please?
Any help would be appreciated.